Live
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R Weekly 2023-W21 HTTP Testing, ggblend, Handling Dates in R and Excel
This week’s release was curated by Batool Almarzouq, with help from the R Weekly team members and contributors.
Highlight
Insights
R in the Real World
R in Organizations
R in Academia
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Correcting selection effects of noisy polygenic scores: an idiot’s guide
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A guide to Bayesian proportion tests with R and {brms}: Use R, Stan, and {brms} to calculate differences between categorical proportions in a principled Bayesian way
Resources
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Yihui’s Webinar on R Markdown v1 at the ASA Philadelphia Chapter
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R Workflow for Reproducible Data Analysis and Reporting Course
New Packages
CRAN
- {ggblend} 0.1.0: Blending and Compositing Algebra for ‘ggplot2’
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{tidysynth} 0.2.0: A Tidy Implementation of the Synthetic Control Method
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{emBayes} 0.1.0: Robust Bayesian Variable Selection via Expectation-Maximization
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{rDEA} 1.2-7: Robust Data Envelopment Analysis (DEA) for R
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{randnet} 0.7: Random Network Model Estimation, Selection and Parameter Tuning
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{modelfree} 1.2: Model-Free Estimation of a Psychometric Function
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{snvecR} 3.7.5: Calculate Earth’s Obliquity and Precession in the Past
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{nonLinearDotPlot} 0.5.0: Non Linear Dot Plots
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{bcv} 1.0.2: Cross-Validation for the SVD (Bi-Cross-Validation)
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{vol2birdR} 1.0.1: Vertical Profiles of Biological Signals in Weather Radar Data
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{CSIndicators} 1.0.1: Climate Services’ Indicators Based on Sub-Seasonal to Decadal Predictions
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{Bernadette} 1.1.1: Bayesian Inference and Model Selection for Stochastic Epidemics
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{Morphoscape} 1.0.2: Computation and Visualization of Adaptive Landscapes
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{Certara.NLME8} 1.2.3: Utilities for Certara’s Nonlinear Mixed-Effects Modeling Engine
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{BIDistances} 0.0.2: Bioinformatic Distances
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{cascadeSelect} 1.0.0: A Cascade Select Input for ‘Shiny’
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{volcano3D} 2.0.9: 3D Volcano Plots and Polar Plots for Three-Class Data
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{agena.ai} 1.0.0: R Wrapper for ‘agena.ai’ API
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{navigation} 0.0.1: Analyze the Impact of Sensor Error Modelling on Navigation Performance
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{compindPCA} 0.1.0: Computation of Relative Weights of Variables and Composite Index Values Based on PCA
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{OpenRepGrid} 0.1.14: Tools to Analyze Repertory Grid Data
- {wcox} 1.0: Weights to Correct for Outcome Dependent Sampling in Time to Event Data
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{validateIt} 1.2.1: Validating Topic Coherence and Topic Labels
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{isopleuros} 1.0.0: Ternary Plots
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{baldur} 0.0.1: Bayesian Hierarchical Modeling for Label-Free Proteomics
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{boostingDEA} 0.1.0: A Boosting Approach to Data Envelopment Analysis
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{weatherindices} 0.1.0: Calculate Weather Indices
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{denguedatahub} 1.0.4: A Tidy Format Datasets of Dengue by Country
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{Tex4exams} 0.1.2: Generating ‘Sweave’ Code for ‘R/exams’ Questions in Mathematics
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{jewel} 2.0.0: Graphical Models Estimation from Multiple Sources
- {rchemo} 0.1-1: Dimension Reduction, Regression and Discrimination for Chemometrics
Updated Packages
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{mirai} 0.8.7: Minimalist Async Evaluation Framework for R
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{scribe} 0.2.0: Command Argument Parsing - diffify
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{fuj} 0.1.3: Functions and Utilities for Jordan - diffify
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{vivainsights} 0.3.1: Analyze and Visualize Data from ‘Microsoft Viva Insights’ - diffify
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{igraph} 1.4.3: Network Analysis and Visualization - diffify
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{spant} 2.12.0: MR Spectroscopy Analysis Tools - diffify
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{future.tests} 0.7.0: Test Suite for ‘Future API’ Backends - diffify
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{TreeBUGS} 1.5.0: Hierarchical Multinomial Processing Tree Modeling - diffify
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{aRtsy} 0.2.3: Generative Art with ‘ggplot2’ - diffify
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{areaplot} 2.0.0: Plot Stacked Areas and Confidence Bands as Filled Polygons - diffify
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{tutorial.helpers} 0.2.5: Helper Functions for Creating Tutorials - diffify
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{IsoplotRgui} 5.3: Web Interface to ‘IsoplotR’ - diffify
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{bspm} 0.5.2: Bridge to System Package Manager - diffify
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{JGR} 1.9-2: Java GUI for R - diffify
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{OpenImageR} 1.2.9: An Image Processing Toolkit - diffify
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{mlflow} 2.3.2: Interface to ‘MLflow’ - diffify
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{modelsummary} 1.4.1: Summary Tables and Plots for Statistical Models and Data: Beautiful, Customizable, and Publication-Ready - diffify
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{PlaneGeometry} 1.4.0: Plane Geometry - diffify
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{BFS} 0.4.7: Get Data from the Swiss Statistical Office - diffify
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{conf} 1.8.1: Visualization and Analysis of Statistical Measures of Confidence - diffify
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{EDCimport} 0.3.0: Import Data from EDC Software - diffify
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{PlotTools} 0.2.0: Add Continuous Legends to Plots - diffify
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{redland} 1.0.17-16.1: RDF Library Bindings in R - diffify
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{materialmodifier} 1.2.0: Apply Photo Editing Effects - diffify
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{shiny.exe} 0.2.0: Launch a Shiny Application without Opening R or RStudio - diffify
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{crosstalkr} 1.0.2: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks - diffify
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{ottrpal} 1.1.1: Companion Tools for Open-Source Tools for Training Resources (OTTR) - diffify
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{DiagrammeR} 1.0.10: Graph/Network Visualization - diffify
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{DT} 0.28: A Wrapper of the JavaScript Library ‘DataTables’ - diffify
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{hockeystick} 0.7.3: Download and Visualize Essential Climate Change Data - diffify
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{gpg} 1.2.9: GNU Privacy Guard for R - diffify
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{prolific.api} 0.5.1: A User-Friendly Interface for Accessing the Prolific API - diffify
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{drhur} 1.1.0: Learning R with Dr. Hu - diffify
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{ausplotsR} 1.2.9: TERN AusPlots Analysis Package - diffify
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{basefun} 1.1-4: Infrastructure for Computing with Basis Functions - diffify
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{valr} 0.6.8: Genome Interval Arithmetic - diffify
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{goeveg} 0.6.4: Functions for Community Data and Ordinations - diffify
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{geojsonio} 0.11.1: Convert Data from and to ‘GeoJSON’ or ‘TopoJSON’ - diffify
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{graphicalVAR} 0.3.1: Graphical VAR for Experience Sampling Data - diffify
Videos and Podcasts
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Yuri Pribish: New approach of visualisation with set of query in human readable way
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Posit Connect, Provide Authenticated Access to Your Data Products
Shiny Apps
Tutorials
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sp evolution status: examples of migration from retiring packages
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Predict the magnitude of #TidyTuesday tornadoes with effect encoding and xgboost
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Scheduling Mastodon Posts in R with rtoot and GitHub Actions
R Project Updates
Updates from R Core:
Upcoming Events in 3 Months
Events in 3 Months:
Jobs
💼 Explore Jobs & Gigs Board on RStudio Community 💼
Quotes of the Week
No matter how long I’ve been doing data science, I still get smacked in the face every once in a while.
— Matt Dancho (Business Science) (@mdancho84) May 21, 2023
True story. 🧵 #datascience #rstats pic.twitter.com/AVy6mgUwxf